Stein-O'Brien Lab

Genevieve Stein-O'Brien, PhD, MHS -- PI

Dr. Stein-O'Brien is an Assistant Professor in the Neuroscience Department at Johns Hopkins University with affiliations in the Brain Science Institute, the Division of Quantitative Sciences in the Department of Oncology, the McKusick-Nathans Department of Genomics Medicine , the Institute for Data Intensive Engineering and Science and the Kavli Neuroscience Discovery Institute . Dr. Stein-O'Brien's research is focused on the stochastic processes underlying gene regulation in dynamic biological systems. Specifically, she develops computational and statistical methods for pattern recognition, latent space detection, and data integration in high-throughput omics.

Jeanette Johnson -- PhD Candidate, Immunology

Jeanette developed pyCoGAPS, a Bayesian nonnegative matrix factorization implemented via Markov Chain Monte Carlo.

Ashley Tsang -- Undergraduate

Ashley developed the CellXGene inferface for CoGAPS, a Bayesian nonnegative matrix factorization implemented via Markov Chain Monte Carlo.

Asher Baraban -- Intern, Software Development

Asher is currently an undergraduate student at WashU in St. Louis, MO. He has been developing scProject, a single cell transfer learning tool for visualization and exploration of latent space utilization.

Alejandra Patino -- Predoctoral Fellow, JHU PREP Program, Current: Duke MD/PhD Program